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Zn-alpha-2-glycoprotein; baculo-ZAG PEG 200
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ZAG PDB ENTRY 1ZAG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 7.5 298 Ammonium sulfate, PEG 200, HEPES, pH 7.5, Microbatch, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 3.82 67.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.878 α = 90 b = 122.878 β = 90 c = 65.227 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2003-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.1271 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 20 99.2 0.056 20.8 3.8 36424
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.02 98.3 98.9 0.487 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1ZAG 1.95 20 36906 36617 1650 99.2 0.214 0.2232 0.249 RANDOM 46.52
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.59 2.59 -5.17
RMS Deviations Key Refinement Restraint Deviation c_torsion_deg 24.8 c_scangle_it 8.87 c_scbond_it 6.41 c_mcangle_it 5.42 c_mcbond_it 4.23 c_angle_deg 1.5 c_torsion_impr_deg 0.96 c_bond_d 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2232 Nucleic Acid Atoms Solvent Atoms 185 Heterogen Atoms 61
Software Software Software Name Purpose CNS refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing