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Crystal structure of rnt1p dsRBD
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1T4N PDB ENTRY 1T4N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 293 0.2M lithium sulfate, 30% PEG 4000, 12% MPD, 0.1M Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 8.50
Crystal Properties Matthews coefficient Solvent content 3.1 60
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.815 α = 90 b = 68.312 β = 121.91 c = 57.178 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-08-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 48.8 7943
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.56 90
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1T4N 2.5 48.8 7162 779 94.3 0.20582 0.19784 0.2088 0.27637 0.2736 RANDOM 48.195
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.02 -3.1 0.91 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.328 r_scangle_it 5.223 r_scbond_it 3.149 r_angle_refined_deg 2.49 r_mcangle_it 2.232 r_mcbond_it 1.268 r_angle_other_deg 1.2 r_symmetry_hbond_refined 0.303 r_symmetry_vdw_other 0.291 r_nbd_refined 0.264
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.328 r_scangle_it 5.223 r_scbond_it 3.149 r_angle_refined_deg 2.49 r_mcangle_it 2.232 r_mcbond_it 1.268 r_angle_other_deg 1.2 r_symmetry_hbond_refined 0.303 r_symmetry_vdw_other 0.291 r_nbd_refined 0.264 r_nbd_other 0.258 r_xyhbond_nbd_refined 0.249 r_symmetry_vdw_refined 0.233 r_chiral_restr 0.141 r_nbtor_other 0.107 r_bond_refined_d 0.032 r_gen_planes_refined 0.01 r_gen_planes_other 0.008 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1302 Nucleic Acid Atoms Solvent Atoms 33 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing