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Structure of DNA gyrase A C-terminal domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 293 sodium phosphate, PEG-3350, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.24 45.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.523 α = 90 b = 82.294 β = 90 c = 88.47 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2003-12-03 M SINGLE WAVELENGTH 2 1 x-ray M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.127, 0.9796, 1.0199 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.75 30 97.9 0.037 29.6 31419 29828 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.75 1.81 91 0.229 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.75 30 1 29828 29828 1589 97.98 0.19508 0.19508 0.19351 0.1948 0.22505 0.2235 RANDOM 17.432
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.89 -1.37 -1.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.533 r_scangle_it 4.289 r_scbond_it 2.515 r_mcangle_it 1.499 r_angle_refined_deg 1.136 r_mcbond_it 0.768 r_nbd_refined 0.208 r_symmetry_vdw_refined 0.153 r_xyhbond_nbd_refined 0.145 r_symmetry_hbond_refined 0.138
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.533 r_scangle_it 4.289 r_scbond_it 2.515 r_mcangle_it 1.499 r_angle_refined_deg 1.136 r_mcbond_it 0.768 r_nbd_refined 0.208 r_symmetry_vdw_refined 0.153 r_xyhbond_nbd_refined 0.145 r_symmetry_hbond_refined 0.138 r_chiral_restr 0.089 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2250 Nucleic Acid Atoms Solvent Atoms 241 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection SCALEPACK data scaling SOLVE phasing