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Crystal Structure of a Soluble Domain of ResA in the Oxidised Form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Se-Met Protein Model obtained by MAD methods
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 289 24-27% PEG 4000, 0.2M Ammonium Acetate, 0.1M Sodium Citrate pH 4.8 - 5.8, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.79 55.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.008 α = 90 b = 61.008 β = 90 c = 165.424 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M MAD 2 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9791, 0.9793, 0.9184 BESSY 14.1 2 SYNCHROTRON ESRF BEAMLINE BM14 0.8856 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.4 50 98.6 0.052 26 5.2 68355 67398 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.45 86.4 0.446 3.1 5905
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT Se-Met Protein Model obtained by MAD methods 1.5 28.63 1 1 55508 55508 99.98 0.12253 0.12253 0.1231 0.1267 12.836
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 12.815 r_dihedral_angle_1_deg 6.273 r_scangle_it 5.268 r_sphericity_bonded 5.224 r_scbond_it 3.674 r_mcangle_it 2.464 r_angle_refined_deg 1.68 r_mcbond_it 1.634 r_rigid_bond_restr 1.076 r_angle_other_deg 0.914
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 12.815 r_dihedral_angle_1_deg 6.273 r_scangle_it 5.268 r_sphericity_bonded 5.224 r_scbond_it 3.674 r_mcangle_it 2.464 r_angle_refined_deg 1.68 r_mcbond_it 1.634 r_rigid_bond_restr 1.076 r_angle_other_deg 0.914 r_symmetry_hbond_refined 0.399 r_symmetry_vdw_other 0.324 r_symmetry_vdw_refined 0.258 r_xyhbond_nbd_refined 0.253 r_nbd_refined 0.248 r_nbd_other 0.246 r_chiral_restr 0.123 r_nbtor_other 0.081 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_gen_planes_other 0.008 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2199 Nucleic Acid Atoms Solvent Atoms 434 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing