1SQP

Crystal Structure Analysis of Bovine Bc1 with Myxothiazol


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1QCR 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION7.227720mM ammonium acetate, 20% glycerol, 12% PEG4000, 0.5M KCl, 0.1% diheptanoyl-phosphatidylcholine, pH 7.2, VAPOR DIFFUSION, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
3.5765.56

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 153.7α = 90
b = 153.7β = 90
c = 596.534γ = 90
Symmetry
Space GroupI 41 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHmirrors2001-04-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 5ID-B1.0APS5ID-B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.7408960389603-1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1QCR2.7408960389603277694.060.264470.262920.31379RANDOM25.083
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.282.28-4.56
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.803
r_scangle_it3.917
r_scbond_it2.436
r_angle_refined_deg1.752
r_mcangle_it1.463
r_mcbond_it0.809
r_symmetry_hbond_refined0.171
r_nbd_refined0.162
r_chiral_restr0.143
r_symmetry_vdw_refined0.127
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.803
r_scangle_it3.917
r_scbond_it2.436
r_angle_refined_deg1.752
r_mcangle_it1.463
r_mcbond_it0.809
r_symmetry_hbond_refined0.171
r_nbd_refined0.162
r_chiral_restr0.143
r_symmetry_vdw_refined0.127
r_xyhbond_nbd_refined0.117
r_bond_refined_d0.021
r_gen_planes_refined0.017
r_bond_other_d
r_angle_other_deg
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_gen_planes_other
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms16502
Nucleic Acid Atoms
Solvent Atoms215
Heterogen Atoms557

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
CNSphasing