X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1FAG 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.3277PEG 2000, MME, 100mM magnesium acetate, pH 6.3, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.4148.6

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 107.312α = 90
b = 166.886β = 90
c = 224.937γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42003-08-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-10.900ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.71599.90.06930.95360053600
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.72.8299.60.4913.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1FAG2.7515492634926326451000.257510.257510.253190.33848RANDOM56.694
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.13-0.04-0.09
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg43.12
r_dihedral_angle_4_deg24.692
r_dihedral_angle_3_deg24.311
r_dihedral_angle_1_deg9.899
r_scangle_it5.719
r_scbond_it3.749
r_angle_refined_deg2.933
r_mcangle_it2.358
r_mcbond_it1.417
r_symmetry_vdw_refined0.348
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg43.12
r_dihedral_angle_4_deg24.692
r_dihedral_angle_3_deg24.311
r_dihedral_angle_1_deg9.899
r_scangle_it5.719
r_scbond_it3.749
r_angle_refined_deg2.933
r_mcangle_it2.358
r_mcbond_it1.417
r_symmetry_vdw_refined0.348
r_nbd_refined0.326
r_xyhbond_nbd_refined0.242
r_metal_ion_refined0.206
r_chiral_restr0.176
r_symmetry_hbond_refined0.141
r_bond_refined_d0.034
r_gen_planes_refined0.011
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms14669
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms244

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing
REFMACrefinement