1SKL
Structure of the antimicrobial hexapeptide cyc-(RRNalNalRF) bound to DPC micelles
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 2.5 mM c-RY, 50 mM D38 dodecyl phosphocholine | 90% H2O/10% D2O | 6.3 | ambient | 300 | ||
2 | 2D TOCSY | 2.5 mM c-RY, 50 mM D38 dodecyl phosphocholine | 90% H2O/10% D2O | 6.3 | ambient | 300 | ||
3 | DQF-COSY | 2.5 mM c-RY, 50 mM D38 dodecyl phosphocholine | 90% H2O/10% D2O | 6.3 | ambient | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | 103 distance restraints, 2 dihedral restraints | XWINNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XWINNMR | 2.6 | Bruker |
2 | data analysis | SPARKY | 3.1 | Goddard, T.D. and Kneller, D.G. |
3 | structure solution | AMBER | 6 | Case, D.A. et al |
4 | refinement | AMBER | 6 | Case, D.A. et al |