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1.65 A structure of Escherichia coli ycfC gene product
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 273 PEG 3350, PEG 400, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 2 38.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.527 α = 90 b = 62.649 β = 90 c = 68.816 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2003-10-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97934 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 50 92.7 0.105 17.6 6.3 22718 21058 -3 11.96
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.65 1.71 60.8 0.477 2.1 3.4 1347
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION isomorphous replacement THROUGHOUT 1.65 15 22698 20765 221 92.63 0.1503 0.1505 0.15014 0.1591 0.18386 0.1903 RANDOM 9.271
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 0.42 -0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.694 r_scangle_it 3.635 r_mcangle_it 2.573 r_scbond_it 2.312 r_angle_refined_deg 2.009 r_mcbond_it 1.579 r_angle_other_deg 0.957 r_symmetry_vdw_other 0.319 r_nbd_other 0.24 r_nbd_refined 0.239
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.694 r_scangle_it 3.635 r_mcangle_it 2.573 r_scbond_it 2.312 r_angle_refined_deg 2.009 r_mcbond_it 1.579 r_angle_other_deg 0.957 r_symmetry_vdw_other 0.319 r_nbd_other 0.24 r_nbd_refined 0.239 r_xyhbond_nbd_refined 0.199 r_symmetry_hbond_refined 0.173 r_chiral_restr 0.11 r_nbtor_other 0.088 r_symmetry_vdw_refined 0.085 r_bond_refined_d 0.023 r_gen_planes_refined 0.009 r_gen_planes_other 0.006 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1657 Nucleic Acid Atoms Solvent Atoms 201 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling