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Structure of Ocr from Bacteriophage T7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.2 291 32%PEG-8000, 0.1M Tris-HCl, 0.2M caesium chloride, pH 8.2, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.85 33.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.777 α = 90 b = 37.665 β = 98.42 c = 35.49 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH channel cut monochromator 2000-03-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 1.2, 0.9777,0.9793 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.83 38.9 0.049 0.049 17.9 8 8923 8923
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.83 1.88 98.5 0.096 0.096 13.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.83 38.9 8426 8426 495 96.91 0.17349 0.16975 0.1822 0.23947 0.2539 RANDOM 10.834
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 -0.48 0.3 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.936 r_scangle_it 6.895 r_scbond_it 4.6 r_dihedral_angle_1_deg 3.552 r_mcangle_it 2.426 r_angle_refined_deg 2.195 r_mcbond_it 1.298 r_angle_other_deg 0.958 r_symmetry_hbond_refined 0.503 r_metal_ion_refined 0.442
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.936 r_scangle_it 6.895 r_scbond_it 4.6 r_dihedral_angle_1_deg 3.552 r_mcangle_it 2.426 r_angle_refined_deg 2.195 r_mcbond_it 1.298 r_angle_other_deg 0.958 r_symmetry_hbond_refined 0.503 r_metal_ion_refined 0.442 r_nbd_refined 0.315 r_symmetry_vdw_refined 0.311 r_nbd_other 0.231 r_symmetry_vdw_other 0.229 r_xyhbond_nbd_refined 0.22 r_chiral_restr 0.12 r_bond_refined_d 0.031 r_gen_planes_refined 0.01 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 876 Nucleic Acid Atoms Solvent Atoms 118 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement DENZO data reduction CCP4 data scaling SOLVE phasing