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CRYSTAL STRUCTURE OF HCV NS3 PROTEASE DOMAIN: NS4A PEPTIDE COMPLEX WITH COVALENTLY BOUND PYRROLIDINE-5,5-TRANSLACTAM INHIBITOR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 277 15mM MES, 0.5M NaCl, 20mM bME, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.86 68.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 224.082 α = 90 b = 224.082 β = 90 c = 75.694 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 35 99.4 0.076 6.6 18742 63.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.75 2.85 97.2 0.528 2.5 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.75 20 17776 960 100 0.182 0.18 0.1781 0.234 0.2285 RANDOM 50.33
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.97 -0.49 -0.97 1.46
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 10.166 r_scbond_it 6.522 r_dihedral_angle_1_deg 5.456 r_mcangle_it 3.855 r_angle_refined_deg 2.164 r_mcbond_it 1.91 r_symmetry_vdw_refined 0.276 r_nbd_refined 0.252 r_xyhbond_nbd_refined 0.178 r_symmetry_hbond_refined 0.129
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 10.166 r_scbond_it 6.522 r_dihedral_angle_1_deg 5.456 r_mcangle_it 3.855 r_angle_refined_deg 2.164 r_mcbond_it 1.91 r_symmetry_vdw_refined 0.276 r_nbd_refined 0.252 r_xyhbond_nbd_refined 0.178 r_symmetry_hbond_refined 0.129 r_chiral_restr 0.128 r_bond_refined_d 0.021 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2732 Nucleic Acid Atoms Solvent Atoms 102 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling