1RSX
12-mer from site II calbindin D9K (DKNGDGEVSFEE) coordinating Cd(II)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D TOCSY | 3mM Peptide and Cd(NO3)2. NaOH and HNO3 added for pH fixing to 6.6; 80% H2O, 20% D2O | 80% H2O, 20% D2O | aprox 0 | 6.6 | ambient | 288 | |
2 | noesyjr | 3mM Peptide and Cd(NO3)2. NaOH and HNO3 added for pH fixing to 6.6; 80% H2O, 20% D2O | 80% H2O, 20% D2O | aprox 0 | 6.6 | ambient | 288 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITY | 600 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | 1.0 | F. Delaglio, S. Grzesiek, G. W. Vuister, G. Zhu, J. Pfeifer, A. Bax |
2 | iterative matrix relaxation | MARDIGRAS | 3.2 | James, Borgias, Thomas, Liu, Kumar, Tonelli |
3 | structure solution | DYANA | 1.5 | Guenter, Mumenthaler, Herrmann |
4 | refinement | DYANA | 1.5 | Guenter, Mumenthaler, Herrmann |