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Extending the Family of UNCG-like Tetraloop Motifs: NMR Structure of a CACG Tetraloop from Coxsackievirus B3
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 1-2mM RNA 25mM sodium phosphate (pH 6.0), 25mM sodium chloride 25 mM NaCl 6.0 ambient 278 2 2D TOCSY 1-2mM RNA 25mM sodium phosphate (pH 6.0), 25mM sodium chloride 25 mM NaCl 6.0 ambient 278 3 DQF-COSY 1-2mM RNA 25mM sodium phosphate (pH 6.0), 25mM sodium chloride 25 mM NaCl 6.0 ambient 278
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600
NMR Refinement Method Details Software torsion angle dynamics and restrained molecular dynamics DYANA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 20 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution DYANA 1.5 Guntert, P. 2 refinement CNS 1.0 Brunger A. 3 data analysis Sparky 1.0 Goddard T.