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Structure of Conserved Protein of Unknown Function TA0108 from Thermoplasma acidophilum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 294 Calcium chloride, PEG 8000, glycerol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.14 42.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.456 α = 90 b = 43.456 β = 90 c = 103.381 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-2 2003-08-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97915 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 40 99 0.058 8.9 16.4 8780 8692
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 1.99 98.3 0.405 517
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD 1.95 37.53 8744 8675 861 99.21 0.21621 0.21241 0.2238 0.23894 0.2231 random 24.029
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.13 0.56 1.13 -1.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.836 r_scangle_it 3.406 r_scbond_it 1.948 r_mcangle_it 1.447 r_angle_refined_deg 1.154 r_angle_other_deg 0.768 r_mcbond_it 0.768 r_symmetry_vdw_refined 0.36 r_symmetry_vdw_other 0.257 r_nbd_other 0.241
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.836 r_scangle_it 3.406 r_scbond_it 1.948 r_mcangle_it 1.447 r_angle_refined_deg 1.154 r_angle_other_deg 0.768 r_mcbond_it 0.768 r_symmetry_vdw_refined 0.36 r_symmetry_vdw_other 0.257 r_nbd_other 0.241 r_nbd_refined 0.203 r_xyhbond_nbd_refined 0.177 r_symmetry_hbond_refined 0.167 r_nbtor_other 0.08 r_chiral_restr 0.062 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 909 Nucleic Acid Atoms Solvent Atoms 65 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SHELXD phasing CNS phasing