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E. COLI RIBOKINASE COMPLEXED WITH RIBOSE AND ADP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.4 CRYSTALS WERE GROWN IN THE PRESENCE OF 0.5 MM RIBOSE, 10 MM AMP-PNP AND 10 MM MGCL2 USING 2.1-2.4 M NH4H2PO4 AS PRECIPITANT AND BUFFERED TO PH 8.4 WITH 0.1 M TRIS-HCL.
Crystal Properties Matthews coefficient Solvent content 3.1 49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.4 α = 90 b = 95.4 β = 90 c = 154.87 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 IMAGE PLATE MARRESEARCH 1996-11-02 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.84 30 95.5 0.055 30.2 7.5 35015 23
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.84 1.87 97.8 0.239 7.4 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MULTIPLE ISOMORPHOUS REPLACEMENT THROUGHOUT 1.84 28 35013 3542 95.5 0.221 0.22 0.2027 0.258 0.207 RANDOM 29
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.6 p_staggered_tor 16.2 p_scangle_it 5 p_planar_tor 4.2 p_scbond_it 3.5 p_mcangle_it 2 p_mcbond_it 1.4 p_multtor_nbd 0.25 p_singtor_nbd 0.18 p_xyhbond_nbd 0.15
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.6 p_staggered_tor 16.2 p_scangle_it 5 p_planar_tor 4.2 p_scbond_it 3.5 p_mcangle_it 2 p_mcbond_it 1.4 p_multtor_nbd 0.25 p_singtor_nbd 0.18 p_xyhbond_nbd 0.15 p_chiral_restr 0.13 p_planar_d 0.033 p_angle_d 0.028 p_plane_restr 0.02 p_bond_d 0.013 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2248 Nucleic Acid Atoms Solvent Atoms 181 Heterogen Atoms 47
Software Software Software Name Purpose MLPHARE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling