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Bacteriophage Lambda Excisionase (Xis)-DNA Complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 291 NaOAc, imidazole, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.6 52.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.215 α = 90 b = 72.691 β = 104.11 c = 38.801 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-03-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X8C 1.10 NSLS X8C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 100 93.1 0.05 0.05 19.8 93.1 32190 3 3 24.125
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.78 95.8 0.135 0.152 8.2 95.8 3280
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.7 20 3 3 21990 1161 97.27 0.19293 0.19293 0.19117 0.22553 0.2696 RANDOM 31.551
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.63 1.19 -1.23 -1.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.203 r_scangle_it 4.492 r_scbond_it 3.102 r_angle_refined_deg 2.582 r_mcangle_it 2.464 r_mcbond_it 1.471 r_angle_other_deg 1.202 r_symmetry_vdw_other 0.42 r_symmetry_vdw_refined 0.297 r_nbd_other 0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.203 r_scangle_it 4.492 r_scbond_it 3.102 r_angle_refined_deg 2.582 r_mcangle_it 2.464 r_mcbond_it 1.471 r_angle_other_deg 1.202 r_symmetry_vdw_other 0.42 r_symmetry_vdw_refined 0.297 r_nbd_other 0.25 r_symmetry_hbond_refined 0.247 r_xyhbond_nbd_refined 0.238 r_nbd_refined 0.223 r_chiral_restr 0.138 r_nbtor_other 0.092 r_bond_refined_d 0.025 r_gen_planes_refined 0.013 r_gen_planes_other 0.009 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_xyhbond_nbd_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 931 Nucleic Acid Atoms 574 Solvent Atoms 152 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MLPHARE phasing