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Crystal Structure of the 1918 Human H1 Hemagglutinin Precursor (HA0)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 294 sodium phosphate, potassium phosphate, sodium citrate, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 3.9 68.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 190.529 α = 90 b = 109.953 β = 108.63 c = 136.238 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2003-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.984 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 50 96.4 0.146 7.6 2.5 51346 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.07 86 0.52 1.4 2.2 3368
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3 49.39 51345 48772 2573 100 0.302 0.27128 0.26998 0.2657 0.29522 0.2905 RANDOM 40.312
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 -0.42 -0.22 -0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.609 r_scangle_it 5.178 r_mcangle_it 4.765 r_scbond_it 3.353 r_mcbond_it 2.468 r_angle_refined_deg 1.844 r_angle_other_deg 1.032 r_nbd_other 0.253 r_nbd_refined 0.24 r_symmetry_vdw_refined 0.201
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.609 r_scangle_it 5.178 r_mcangle_it 4.765 r_scbond_it 3.353 r_mcbond_it 2.468 r_angle_refined_deg 1.844 r_angle_other_deg 1.032 r_nbd_other 0.253 r_nbd_refined 0.24 r_symmetry_vdw_refined 0.201 r_symmetry_vdw_other 0.199 r_xyhbond_nbd_refined 0.181 r_nbtor_other 0.096 r_chiral_restr 0.095 r_bond_refined_d 0.019 r_gen_planes_other 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_refined r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11865 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 217
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing