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Crystal Structures of an Archaeal Class I CCA-Adding Enzyme and Its Nucleotide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.4 293 Calcium Chloride, Ethanol, Tris, magnesium chloride, sodium chloride, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.59 52.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.151 α = 90 b = 79.954 β = 97.53 c = 78.145 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 1.0 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 40 0.052 29 4.2 40586 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 35.58 38511 2054 97.92 0.1823 0.18055 0.1912 0.21493 0.2278 RANDOM 24.339
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 0.03 0.08
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.77 r_dihedral_angle_1_deg 5.714 r_scbond_it 3.64 r_mcangle_it 2.579 r_mcbond_it 1.498 r_angle_refined_deg 1.386 r_angle_other_deg 0.82 r_symmetry_vdw_other 0.283 r_metal_ion_refined 0.259 r_nbd_other 0.226
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.77 r_dihedral_angle_1_deg 5.714 r_scbond_it 3.64 r_mcangle_it 2.579 r_mcbond_it 1.498 r_angle_refined_deg 1.386 r_angle_other_deg 0.82 r_symmetry_vdw_other 0.283 r_metal_ion_refined 0.259 r_nbd_other 0.226 r_nbd_refined 0.205 r_xyhbond_nbd_refined 0.182 r_symmetry_vdw_refined 0.151 r_symmetry_hbond_refined 0.142 r_chiral_restr 0.088 r_nbtor_other 0.082 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3630 Nucleic Acid Atoms Solvent Atoms 328 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing