X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4293ammonium sulfate, sodium acetate, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.0639.68

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 64.285α = 90
b = 64.285β = 90
c = 32.848γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298IMAGE PLATERIGAKU RAXIS IICmirrorMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.650990.0711.32.266116611
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.61.6691.50.3861.61.7612

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1iro1.618.57660862973111000.158390.15640.2055RANDOM15.203
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.59-0.3-0.590.89
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.172
r_scangle_it3.668
r_scbond_it2.263
r_angle_refined_deg1.634
r_mcangle_it1.496
r_angle_other_deg1.246
r_mcbond_it0.739
r_nbd_refined0.386
r_symmetry_vdw_other0.278
r_nbd_other0.274
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.172
r_scangle_it3.668
r_scbond_it2.263
r_angle_refined_deg1.634
r_mcangle_it1.496
r_angle_other_deg1.246
r_mcbond_it0.739
r_nbd_refined0.386
r_symmetry_vdw_other0.278
r_nbd_other0.274
r_nbtor_other0.216
r_symmetry_hbond_refined0.207
r_symmetry_vdw_refined0.183
r_chiral_restr0.137
r_xyhbond_nbd_refined0.084
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms417
Nucleic Acid Atoms
Solvent Atoms36
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling