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Structure of rabbit actin in complex with jaspisamide A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Batch 7 293 Crystals were grown by small-scale batch by mixing equal volumes of the complex (10 mg/ml protein) and 100 mM bis-tris propane, 15% (w/v) dimethyl polyethylene glycol 5000, 25 mM CaCl2, 1 mM sodium azide, 1 mM TCEP, pH 7.0, Batch, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.44 49.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.37 α = 90 b = 75.958 β = 99.07 c = 67.494 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.979 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 30 99.1 0.044 37 4.5 52492 52492 13.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.66 10 0.303 5.2 5094
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 20 50256 49794 2672 99.08 0.16689 0.16689 0.16529 0.1769 0.19651 0.2068 RANDOM 16.884
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.2 0.37 0.08 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.603 r_scangle_it 4.711 r_scbond_it 2.921 r_mcangle_it 1.9 r_angle_refined_deg 1.682 r_angle_other_deg 1.483 r_mcbond_it 1.007 r_symmetry_hbond_refined 0.437 r_symmetry_vdw_other 0.412 r_nbd_other 0.243
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.603 r_scangle_it 4.711 r_scbond_it 2.921 r_mcangle_it 1.9 r_angle_refined_deg 1.682 r_angle_other_deg 1.483 r_mcbond_it 1.007 r_symmetry_hbond_refined 0.437 r_symmetry_vdw_other 0.412 r_nbd_other 0.243 r_symmetry_vdw_refined 0.237 r_nbd_refined 0.217 r_xyhbond_nbd_refined 0.161 r_chiral_restr 0.098 r_nbtor_other 0.085 r_bond_refined_d 0.016 r_gen_planes_refined 0.01 r_gen_planes_other 0.009 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2820 Nucleic Acid Atoms Solvent Atoms 274 Heterogen Atoms 116
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing