☰ Navigation Tabs
HORSE LIVER ALCOHOL DEHYDROGENASE HIS51GLN/LYS228ARG MUTANT COMPLEXED WITH NAD+ AND 2,3-DIFLUOROBENZYL ALCOHOL
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HLD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 dialysis 7 278 50 mM ammonium N-[tris(hydroxymethyl)methyl)]-2-aminoethanesulfonate buffer, 1 mM NAD+, 10 mM 2,3-difluorobenzyl alcohol, 2-methyl-2,4-pentanediol, pH 7.0, dialysis, temperature 278K
Crystal Properties Matthews coefficient Solvent content 2.37 48.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.05 α = 91.61 b = 50.962 β = 103.03 c = 92.466 γ = 109.86
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1998-08-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 1.030 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 95.1 0.11 0.11 7.3 1.95 67918 67918 18.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.9 91.9 0.38 2.72 2.06 8849
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1hld 1.8 20 62982 62982 1608 95.19 0.1784 0.17845 0.17732 0.1856 0.22205 0.227 RANDOM 21.007
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.36 -0.96 0.66 0.73 0.49 -1.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 16.667 r_scangle_it 4.982 r_dihedral_angle_1_deg 4.747 r_scbond_it 2.997 r_angle_refined_deg 1.825 r_mcangle_it 1.802 r_angle_other_deg 1.49 r_mcbond_it 1.033 r_symmetry_hbond_refined 0.296 r_symmetry_vdw_other 0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 16.667 r_scangle_it 4.982 r_dihedral_angle_1_deg 4.747 r_scbond_it 2.997 r_angle_refined_deg 1.825 r_mcangle_it 1.802 r_angle_other_deg 1.49 r_mcbond_it 1.033 r_symmetry_hbond_refined 0.296 r_symmetry_vdw_other 0.25 r_nbd_refined 0.22 r_nbd_other 0.209 r_symmetry_vdw_refined 0.148 r_xyhbond_nbd_refined 0.144 r_chiral_restr 0.11 r_xyhbond_nbd_other 0.084 r_bond_refined_d 0.02 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5572 Nucleic Acid Atoms Solvent Atoms 489 Heterogen Atoms 112
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling AMoRE phasing