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A MUTANT SHIGA-LIKE TOXIN IIE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BOV PDB ENTRY 1BOV AND 2BOS experimental model PDB 2BOS PDB ENTRY 1BOV AND 2BOS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 8% PEG8000, 0.1M NACL, 0.1M IMIDAZOLE, PH=7.4, pH 7.40
Crystal Properties Matthews coefficient Solvent content 2.25 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.49 α = 90 b = 54.51 β = 109.12 c = 116.89 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 287 AREA DETECTOR SIEMENS COLLIMATOR 1993-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE SIEMENS
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 20.36 60.1 0.0844 0.0844 8.415 1.83 34188 41
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.49 24.9 0.3296 0.3296 0.968 1.66
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1BOV AND 2BOS 2.35 21 34187 1055 60.4 0.188 0.188 0.1885 0.234 0.2326 SHELLS 28.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.87 4.49 4.65 -1.78
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.1 c_scangle_it 3.75 c_mcangle_it 2.44 c_scbond_it 2.41 c_angle_deg 1.6 c_mcbond_it 1.49 c_improper_angle_d 0.78 c_bond_d 0.012 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.1 c_scangle_it 3.75 c_mcangle_it 2.44 c_scbond_it 2.41 c_angle_deg 1.6 c_mcbond_it 1.49 c_improper_angle_d 0.78 c_bond_d 0.012 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10660 Nucleic Acid Atoms Solvent Atoms 359 Heterogen Atoms
Software Software Software Name Purpose CNS refinement XENGEN data reduction XENGEN data scaling CNS phasing