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The 3-D structure of a Trichoderma reesei b-mannanase from glycoside hydrolase family 5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 2M AMMONIUM SULPHATE, 0.1M GLYCINE PH 8.5
Crystal Properties Matthews coefficient Solvent content 1.9 36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.18 α = 90 b = 54.6 β = 111.23 c = 60.76 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 20 99.8 0.063 20.9 3.7 48906 9.72
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 95.4 0.063 20.9 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1.5 20 48906 99.8 0.127 0.174 RANDOM 11.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.378 0.216 0.091 0.29
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 36.7 p_special_tor 15 p_staggered_tor 11.7 p_planar_tor 5 p_scangle_it 3.025 p_mcangle_it 2.567 p_scbond_it 2.379 p_mcbond_it 2.015 p_multtor_nbd 0.256 p_singtor_nbd 0.166
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 36.7 p_special_tor 15 p_staggered_tor 11.7 p_planar_tor 5 p_scangle_it 3.025 p_mcangle_it 2.567 p_scbond_it 2.379 p_mcbond_it 2.015 p_multtor_nbd 0.256 p_singtor_nbd 0.166 p_chiral_restr 0.132 p_planar_d 0.036 p_angle_d 0.031 p_plane_restr 0.0275 p_bond_d 0.016 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_xyhbond_nbd p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2669 Nucleic Acid Atoms Solvent Atoms 477 Heterogen Atoms 67
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling