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The 3-D structure of a Trichoderma reesei b-mannanase from glycoside hydrolase family 5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 2M AMMONIUM SULPHATE 0.1M TRIS-HCL PH 8.5
Crystal Properties Matthews coefficient Solvent content 1.9 35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.01 α = 90 b = 54.27 β = 111.31 c = 60.24 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 290 IMAGE PLATE MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 97.8 0.03 42.8 5.6 19562 10.462
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 74.6 0.03 20.8 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 2 20 19562 97.8 0.126 0.2 RANDOM 10.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 36.4 p_special_tor 15 p_staggered_tor 11.9 p_planar_tor 8.5 p_scangle_it 2.902 p_mcangle_it 2.48 p_scbond_it 2.062 p_mcbond_it 1.832 p_multtor_nbd 0.255 p_singtor_nbd 0.175
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 36.4 p_special_tor 15 p_staggered_tor 11.9 p_planar_tor 8.5 p_scangle_it 2.902 p_mcangle_it 2.48 p_scbond_it 2.062 p_mcbond_it 1.832 p_multtor_nbd 0.255 p_singtor_nbd 0.175 p_chiral_restr 0.132 p_planar_d 0.044 p_angle_d 0.034 p_plane_restr 0.0268 p_bond_d 0.015 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_xyhbond_nbd p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2669 Nucleic Acid Atoms Solvent Atoms 406 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling