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HIGH RESOLUTION STRUCTURE OF THE OUTER MEMBRANE PROTEIN A (OMPA) TRANSMEMBRANE DOMAIN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BXW PDB ENTRY 1BXW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 10% PEG 8000, 10 % MPD, 25 MM KH2PO4 PH 5.1
Crystal Properties Matthews coefficient Solvent content 3.5 65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.1 α = 90 b = 79.7 β = 94.3 c = 50.2 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1998-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 20 95.4 0.061 13.7 2.5 29702 26
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.75 94.2 0.307 3.2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1BXW 1.65 12 29702 95.4 0.155 0.2183 0.198 0.2483 RANDOM 44
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 22.8 p_staggered_tor 14.9 p_scangle_it 10.197 p_mcangle_it 9.204 p_scbond_it 7.742 p_mcbond_it 6.823 p_planar_tor 4.2 p_multtor_nbd 0.235 p_singtor_nbd 0.175 p_xyhbond_nbd 0.173
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 22.8 p_staggered_tor 14.9 p_scangle_it 10.197 p_mcangle_it 9.204 p_scbond_it 7.742 p_mcbond_it 6.823 p_planar_tor 4.2 p_multtor_nbd 0.235 p_singtor_nbd 0.175 p_xyhbond_nbd 0.173 p_planar_d 0.065 p_angle_d 0.037 p_plane_restr 0.0245 p_bond_d 0.008 p_angle_deg p_hb_or_metal_coord p_chiral_restr p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1078 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms 126
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing