1QHU

MAMMALIAN BLOOD SERUM HAEMOPEXIN DEGLYCOSYLATED AND IN COMPLEX WITH ITS LIGAND HAEM


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1HXN1HXN AND 1FBL
experimental modelPDB 1FBL1HXN AND 1FBL

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.5HANGING DROP, 4 DEGREES CENTIGRADES, RESEVOIR SOLUTION: 19-22% PEG 4000, 0.05 M TRIS HCL PH 7.5, 0.05-0.5 M EDTA, 0.2 NACL PROTEIN COMPLEX SOLUTION: 40 MG/ ML IN 0.05 M TRIS PH 7.0 AND 0.2 M NACL
Crystal Properties
Matthews coefficientSolvent content
1.9235

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.68α = 90
b = 61.95β = 93.21
c = 83.29γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHCOLLIMATOR1997-02-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL7-1SSRLBL7-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.32094.70.0962.41923338
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.32.42770.3242.12.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1HXN AND 1FBL2.3202.51923395194.70.2010.2070.289RANDOM35
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor27
p_staggered_tor23.8
p_planar_tor17.7
p_scangle_it2.506
p_mcangle_it1.839
p_scbond_it1.697
p_mcbond_it1.094
p_multtor_nbd0.211
p_singtor_nbd0.183
p_angle_d0.032
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor27
p_staggered_tor23.8
p_planar_tor17.7
p_scangle_it2.506
p_mcangle_it1.839
p_scbond_it1.697
p_mcbond_it1.094
p_multtor_nbd0.211
p_singtor_nbd0.183
p_angle_d0.032
p_bond_d0.014
p_angle_deg
p_planar_d
p_hb_or_metal_coord
p_plane_restr
p_chiral_restr
p_xhyhbond_nbd
p_xyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3199
Nucleic Acid Atoms
Solvent Atoms210
Heterogen Atoms54

Software

Software
Software NamePurpose
DENZOdata reduction
CCP4data reduction
AMoREphasing
MAMAmodel building
MAVEmodel building
REFMACrefinement
CCP4data scaling
ROTAVATAdata scaling
MAMAphasing
MAVEphasing