1QHU
MAMMALIAN BLOOD SERUM HAEMOPEXIN DEGLYCOSYLATED AND IN COMPLEX WITH ITS LIGAND HAEM
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | 7.5 | HANGING DROP, 4 DEGREES CENTIGRADES, RESEVOIR SOLUTION: 19-22% PEG 4000, 0.05 M TRIS HCL PH 7.5, 0.05-0.5 M EDTA, 0.2 NACL PROTEIN COMPLEX SOLUTION: 40 MG/ ML IN 0.05 M TRIS PH 7.0 AND 0.2 M NACL |
Crystal Properties | |
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Matthews coefficient | Solvent content |
1.92 | 35 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 44.68 | α = 90 |
b = 61.95 | β = 93.21 |
c = 83.29 | γ = 90 |
Symmetry | |
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Space Group | P 1 21 1 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | IMAGE PLATE | MARRESEARCH | COLLIMATOR | 1997-02-25 | M | SINGLE WAVELENGTH |
Radiation Source | |||||
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ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | SSRL BEAMLINE BL7-1 | SSRL | BL7-1 |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1 | 2.3 | 20 | 94.7 | 0.09 | 6 | 2.4 | 19233 | 38 |
Highest Resolution Shell | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||||||
2.3 | 2.42 | 77 | 0.324 | 2.1 | 2.1 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Starting model | Resolution (High) | Resolution (Low) | Cut-off Sigma (F) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work | R-Free | R-Free Selection Details | Mean Isotropic B | |||||
X-RAY DIFFRACTION | MOLECULAR REPLACEMENT | THROUGHOUT | 1HXN AND 1FBL | 2.3 | 20 | 2.5 | 19233 | 951 | 94.7 | 0.201 | 0.207 | 0.289 | RANDOM | 35 |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
p_transverse_tor | 27 |
p_staggered_tor | 23.8 |
p_planar_tor | 17.7 |
p_scangle_it | 2.506 |
p_mcangle_it | 1.839 |
p_scbond_it | 1.697 |
p_mcbond_it | 1.094 |
p_multtor_nbd | 0.211 |
p_singtor_nbd | 0.183 |
p_angle_d | 0.032 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 3199 |
Nucleic Acid Atoms | |
Solvent Atoms | 210 |
Heterogen Atoms | 54 |
Software
Software | |
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Software Name | Purpose |
DENZO | data reduction |
CCP4 | data reduction |
AMoRE | phasing |
MAMA | model building |
MAVE | model building |
REFMAC | refinement |
CCP4 | data scaling |
ROTAVATA | data scaling |
MAMA | phasing |
MAVE | phasing |