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YEAST PHOSPHOGLYCERATE MUTASE-3PG COMPLEX STRUCTURE TO 1.7 A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3PGM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.8 55% AMMONIUM SULFATE IN 10MM IMIDAZOLE BUFFER PH 6.8 WITH 1MM 3PG AND
CONCENTRATION OF 10 MG ML PROTEIN
Crystal Properties Matthews coefficient Solvent content 2.71 51.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.4 α = 90 b = 85.9 β = 120.6 c = 81.9 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 287 IMAGE PLATE MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.5 SRS PX9.5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 22 82.5 0.088 2.2 42944 26.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 2.3 77.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 3PGM 1.7 20 42944 82.5 0.177 0.215 RANDOM 26.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.2 p_staggered_tor 15 p_scangle_it 7.7 p_scbond_it 5.7 p_planar_tor 4 p_mcangle_it 3.5 p_mcbond_it 2.8 p_chiral_restr 0.15 p_planar_d 0.034 p_angle_d 0.029
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.2 p_staggered_tor 15 p_scangle_it 7.7 p_scbond_it 5.7 p_planar_tor 4 p_mcangle_it 3.5 p_mcbond_it 2.8 p_chiral_restr 0.15 p_planar_d 0.034 p_angle_d 0.029 p_plane_restr 0.02 p_bond_d 0.012 p_angle_deg p_hb_or_metal_coord p_singtor_nbd p_multtor_nbd p_xhyhbond_nbd p_xyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3798 Nucleic Acid Atoms Solvent Atoms 267 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALEPACK data scaling