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SOLUTION NMR STRUCTURE OF ECTODOMAIN OF SIV GP41, RESTRAINED REGULARIZED MEAN STRUCTURE PLUS 29 SIMULATED ANNEALING STRUCTURES
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
TRIPLE RESONANCE FOR ASSIGNMENT OF PROTEIN: D-HNCA
3.00
322.00
2
D-HNCO
3.00
322.00
3
D-HN(CO) CA
3.00
322.00
4
D-HN(CA)CO D-HNCACB
3.00
322.00
5
D-HN(COCA)CB
3.00
322.00
6
D-HN(CA) CB
3.00
322.00
7
D-C(CC)(CO)NH
3.00
322.00
8
HBHA(CO)NH
3.00
322.00
9
HCACO
3.00
322.00
10
HNCO
3.00
322.00
11
HNHA
3.00
322.00
12
HCCH-COSY
3.00
322.00
13
HCCH- TOCSY
3.00
322.00
14
4D HCCH 13C-13C NOE
3.00
322.00
15
QUANTITATIVE J CORRELATION FOR COUPLING CONSTANTS
3.00
322.00
16
3D 15N- SEPARATED NOE AND ROE
3.00
322.00
17
3D 13C-SEPARATED NOE
3.00
322.00
18
3D 13C-SEPARATED/12C_ FILTERED NOE
3.00
322.00
19
3D 13C- SEPARATED/15N-FILTERED NOE
3.00
322.00
20
3D 15N-SEPARATED/ 13C-FILTERED NOE
3.00
322.00
21
4D 15N/15N-SEPARATED NOE
3.00
322.00
22
4D 15N/13C-SEPARATED NOE AND 4D 13C/13C-SEPARATED NOE EXPERIMENTS
3.00
322.00
23
3D HCA(CO)N FOR THREE-BOND AMIDE DEUTERIUM ISOTOPE SHIFTS
3.00
322.00
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
DMX500
500
2
Bruker
DMX600
600
3
Bruker
DMX750
750
NMR Refinement
Method
Details
Software
simulated annealing
TERMS IN THE TARGET FUNCTION USED FOR SIMULATED ANNEALING:
NOE (SUM AVERAGING) AND TORSION ANGLE RESTRAINTS
3JHNALPHA COUPLING CONSTANT RESTRAINTS
AND THREE_BOND DEUTERIUMCALPHA(ND) ISOTOPE
RESTRAINTS (GARRETT ET AL
J. MAGN. RESON. B104, 99-103 (1994)).
13CALPHA AND 13CBETA CHEMISCAL SHIFT RESTRAINTS
(KUSZEWSKI ET AL J> MAGN RESON B106, 92-96 (1995))
TERM FOR THE RADIUS OF GYRATION (KUSZEWSKI J, GRONENB
CLORE, GM J AM CHEM SOC 121, 2337-2338 (1999))
TORSION ANGLE DATABASE POTENTIAL (KUSZEWSKI J, GRONEN
CLORE GM. PROTEIN SCI 5, 1067-1080 (1996); J. MAGN
125, 171-177 (1997)).
COVALENT GEOMETRY RESTRAINTS (BONDS, ANGLES, IMPROPER
QUARTIC VAN DER WAALS REPULSION TERM (NILGES. M,
GRONENBORN, A.M., BRUNGER, A.T., CLORE, G.M. (1988)
PROTEIN ENG. 2, 27-38).