1Q7J
Structural Analysis of Integrin alpha IIb beta 3- Disintegrin with the AKGDWN Motif
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 3mM Rhodostomin | 90% H2O/10% D2O | 0 | 6.0 | ambient | 300 | |
2 | 2D TOCSY | 3mM Rhodostomin | 90% H2O/10% D2O | 0 | 6.0 | ambient | 300 | |
3 | 3D_15N-separated_NOESY | 2.5mM U-15N | 90% H2O/10% D2O | 0 | 6.0 | ambient | 300 | |
4 | 3D_15N-separated_TOCSY | 2.5mM U-15N | 90% H2O/10% D2O | 0 | 6.0 | ambient | 300 | |
5 | HNHA | 2.5mM U-15N | 90% H2O/10% D2O | 0 | 6.0 | ambient | 300 | |
6 | 15N-HSQC | 2.5mM U-15N | 90% H2O/10% D2O | 0 | 6.0 | ambient | 300 | |
7 | 2D NOESY | 3mM Rhodostomin | 100% D2O | 0 | 6.0 | ambient | 300 | |
8 | 2D TOCSY | 3mM Rhodostomin | 100% D2O | 0 | 6.0 | ambient | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
Hybrid distance geometry-dynamical simulated annealing method | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 20 |
Representative Model | 15 (fewest violations, lowest energy) |
Additional NMR Experimental Information | |
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Details | This structure was determined using standard 2D homonuclear techniques |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | XwinNMR | 2.6 | Bruker |
2 | data analysis | AURELIA | 2.7.10 | Neidig |
3 | refinement | X-PLOR | 3.85 | Brunger |