☰ Navigation Tabs
The Crystal Structure of 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside Deacetylase (MshB)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 298 15% PEG4000, 50mM Tris-HCl, 0.1M Mg(NO3)2, 6% 1,6-hexanediol and 10% ethyleneglycol, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.57 52.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.794 α = 102.09 b = 73.964 β = 108.16 c = 85.587 γ = 97.18
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-12-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 20 96.3 0.05 0.05 3.9 1331320 517484 4.8 2.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.78 95.3 0.296 0.296 2.2 3.7 19275
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.7 19.84 2.2 4.8 1331320 127442 6745 96.34 0.19608 0.19608 0.1944 0.2022 0.22787 0.2272 RANDOM 20.26
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 15.638 r_dihedral_angle_1_deg 4.937 r_scangle_it 4.694 r_scbond_it 2.943 r_mcangle_it 1.907 r_angle_refined_deg 1.899 r_angle_other_deg 1.468 r_mcbond_it 1.108 r_symmetry_hbond_refined 0.316 r_nbd_refined 0.193
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 15.638 r_dihedral_angle_1_deg 4.937 r_scangle_it 4.694 r_scbond_it 2.943 r_mcangle_it 1.907 r_angle_refined_deg 1.899 r_angle_other_deg 1.468 r_mcbond_it 1.108 r_symmetry_hbond_refined 0.316 r_nbd_refined 0.193 r_symmetry_vdw_other 0.152 r_xyhbond_nbd_refined 0.149 r_symmetry_vdw_refined 0.139 r_nbd_other 0.133 r_chiral_restr 0.116 r_xyhbond_nbd_other 0.1 r_bond_refined_d 0.019 r_gen_planes_other 0.017 r_gen_planes_refined 0.013 r_bond_other_d 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8364 Nucleic Acid Atoms Solvent Atoms 760 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SOLVE phasing