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Processed Aspartate Decarboxylase Mutant with Ser25 mutated to Cys
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AW8 PDB ENTRY 1aw8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 290 0.1M citric acid, 1.6M ammonium sulphate, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.5 50.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.787 α = 90 b = 70.787 β = 90 c = 217.121 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV Osmic Confocal MaxFlux optic system 2003-03-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 98.7 0.082 28.3 12.6 26051 25322 2 2 31.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.92 88.3 0.323 3.011 767
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1aw8 1.9 30 2 26051 24733 1325 98.62 0.17379 0.17256 0.19614 0.2244 RANDOM 19.04
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.54 0.27 0.54 -0.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.168 r_scangle_it 3.029 r_scbond_it 1.921 r_angle_refined_deg 1.417 r_angle_other_deg 1.153 r_mcangle_it 1.148 r_mcbond_it 0.636 r_symmetry_vdw_other 0.341 r_symmetry_hbond_refined 0.272 r_xyhbond_nbd_refined 0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.168 r_scangle_it 3.029 r_scbond_it 1.921 r_angle_refined_deg 1.417 r_angle_other_deg 1.153 r_mcangle_it 1.148 r_mcbond_it 0.636 r_symmetry_vdw_other 0.341 r_symmetry_hbond_refined 0.272 r_xyhbond_nbd_refined 0.27 r_nbd_other 0.253 r_nbd_refined 0.227 r_symmetry_vdw_refined 0.199 r_chiral_restr 0.115 r_nbtor_other 0.087 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1777 Nucleic Acid Atoms Solvent Atoms 180 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CNS phasing