X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1RGGPDB entry 1RGG

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.2293ammonium sulfate, phosphate buffer, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.0359.46

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 102.29α = 90
b = 68.7β = 100.4
c = 57.51γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293AREA DETECTORMARRESEARCHmirrors1996-04-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X310.9185EMBL/DESY, HAMBURGX31

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.81599.20.05220.53.45359553595523.2
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.8398.40.3782.962.81759

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 1RGG1.81534158179699.20.1750.174840.172460.21825RANDOM26.486
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.890.132.17-1.23
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free16.616
r_dihedral_angle_1_deg7.282
r_scangle_it6.332
r_sphericity_bonded5.693
r_scbond_it4.179
r_mcangle_it3.229
r_rigid_bond_restr2.131
r_angle_other_deg2.112
r_mcbond_it2.048
r_angle_refined_deg1.832
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free16.616
r_dihedral_angle_1_deg7.282
r_scangle_it6.332
r_sphericity_bonded5.693
r_scbond_it4.179
r_mcangle_it3.229
r_rigid_bond_restr2.131
r_angle_other_deg2.112
r_mcbond_it2.048
r_angle_refined_deg1.832
r_symmetry_vdw_other0.307
r_symmetry_vdw_refined0.303
r_nbd_other0.254
r_nbd_refined0.24
r_xyhbond_nbd_refined0.234
r_symmetry_hbond_refined0.231
r_chiral_restr0.123
r_nbtor_other0.098
r_bond_refined_d0.021
r_gen_planes_refined0.009
r_gen_planes_other0.005
r_bond_other_d0.002
r_dihedral_angle_2_deg
r_xyhbond_nbd_other
r_symmetry_hbond_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2215
Nucleic Acid Atoms
Solvent Atoms277
Heterogen Atoms5

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing