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Structure of E. coli Ybab
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 291 1.9M Ammonium Sulfate 0.1MSodium HEPES pH 7.5 5% Ethylene Glycol, VAPOR DIFFUSION, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.13 60.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.866 α = 90 b = 84.236 β = 90 c = 86.636 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-05-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.9798 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 99.3 0.073 37158 36898 -0.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.97 94.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIR THROUGHOUT 2.2 20 22948 22865 1177 99.64 0.21584 0.21211 0.28412 0.2936 RANDOM 63.383
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.41 -3.67 1.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.222 r_scangle_it 6.845 r_scbond_it 3.966 r_mcangle_it 3.134 r_angle_refined_deg 2.407 r_mcbond_it 1.776 r_angle_other_deg 1.187 r_symmetry_hbond_refined 0.414 r_symmetry_vdw_other 0.369 r_symmetry_vdw_refined 0.324
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.222 r_scangle_it 6.845 r_scbond_it 3.966 r_mcangle_it 3.134 r_angle_refined_deg 2.407 r_mcbond_it 1.776 r_angle_other_deg 1.187 r_symmetry_hbond_refined 0.414 r_symmetry_vdw_other 0.369 r_symmetry_vdw_refined 0.324 r_nbd_refined 0.27 r_nbd_other 0.267 r_xyhbond_nbd_refined 0.23 r_chiral_restr 0.142 r_nbtor_other 0.104 r_bond_refined_d 0.032 r_gen_planes_other 0.014 r_gen_planes_refined 0.012 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2492 Nucleic Acid Atoms Solvent Atoms 163 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE model building REFMAC refinement RESOLVE phasing