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Bovine cytochrome bc1 complex with stigmatellin and antimycin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BE3 PDB ENTRIES 1BE3 2BCC experimental model PDB 2BCC PDB ENTRIES 1BE3 2BCC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.7 277 PEG-3350, JEFFAMINE, GLYCEROL, CACODYLATE, HEXYLGLUCOSIDE , pH 6.7, VAPOR DIFFUSION, SITTING DROP, temperature 277K, pH 6.70
Crystal Properties Matthews coefficient Solvent content 2.74 54.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.53 α = 90 b = 168.748 β = 90 c = 231.533 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH SI(311)MONOCHROMATOR (HORIZONTAL) 2002-06-26 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 4 TOROIDAL FUCUSING MIRROR 2002-06-30 M SINGLE WAVELENGTH 3 1 x-ray 100 CCD ADSC QUANTUM 210 FLAT MIRROR(VERTICAL) 2002-10-06 M SINGLE WAVELENGTH 4 1 x-ray 100 CCD ADSC QUANTUM 210 2002-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 SSRL BL9-1 2 SYNCHROTRON ALS BEAMLINE 5.0.1 ALS 5.0.1 3 SYNCHROTRON ALS BEAMLINE 5.0.2 ALS 5.0.2 4 SYNCHROTRON ALS BEAMLINE 8.2.2 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2,3,4 2.1 250 98.1 0.149 18.689 5.63 285923 -3 33.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2,3,4 2.1 2.15 94.3 0.879 2.819
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 1BE3 2BCC 2.1 93.53 288448 285060 14181 97.7 0.224 0.224 0.2195 0.26 0.2355 RANDOM 50.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 12.34 -3.71 -8.63
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 21.8 c_scangle_it 4.3 c_scbond_it 2.83 c_mcangle_it 2.7 c_mcbond_it 1.62 c_angle_deg 1.4 c_improper_angle_d 0.94 c_bond_d 0.006 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 21.8 c_scangle_it 4.3 c_scbond_it 2.83 c_mcangle_it 2.7 c_mcbond_it 1.62 c_angle_deg 1.4 c_improper_angle_d 0.94 c_bond_d 0.006 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 31181 Nucleic Acid Atoms Solvent Atoms 1370 Heterogen Atoms 998
Software Software Software Name Purpose CNS refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing