☰ Navigation Tabs
E28Q mutant Benzoylformate Decarboxylase From Pseudomonas Putida
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BFD PDB ENTRY 1BFD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 293 22% PEG 400, 0.15 M CaCl2, 0.5% MPD, 0.1 M TRIS-Cl (pH 8.5), 0.1 mM MgCl2, 0.2 mM TZD, 25 mM NA-HEPES (pH 7.0) VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 8.50
Crystal Properties Matthews coefficient Solvent content 2.03 47.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.96 α = 90 b = 95.528 β = 90 c = 137.061 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-11-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 20 87.6 0.06 0.066 12.5 137252 10.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.24 74.2 0.281
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R PDB ENTRY 1BFD 1.2 20 165003 7287 87.6 0.121 0.169 0.136 RANDOM 14.77
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 7 3825.35 4406.93
RMS Deviations Key Refinement Restraint Deviation s_zero_chiral_vol 0.091 s_non_zero_chiral_vol 0.084 s_approx_iso_adps 0.079 s_anti_bump_dis_restr 0.062 s_similar_adp_cmpnt 0.036 s_from_restr_planes 0.03 s_angle_d 0.029 s_bond_d 0.014 s_rigid_bond_adp_cmpnt 0.005 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3928 Nucleic Acid Atoms Solvent Atoms 504 Heterogen Atoms 31
Software Software Software Name Purpose SHELX model building SHELXL-97 refinement DENZO data reduction SCALEPACK data scaling CNS phasing SHELXL-97 phasing