1PGC
NMR Solution Structure of an Oxaliplatin 1,2-d(GG) Intrastrand Cross-Link in a DNA Dodecamer Duplex
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 100mM NaCl, 5mM NaPi buffer, 95% H2O, 5% D2O | 95% H2O/5% D2O | 100mM NaCl, 5mM NaPi | 7.0 | 1 atm | 298 | |
2 | 2D TOCSY | 100mM NaCl, 5mM NaPi buffer, 95% H2O, 5% D2O | 95% H2O/5% D2O | 100mM NaCl, 5mM NaPi | 7.0 | 1 atm | 298 | |
3 | DQF-COSY | 100mM NaCl, 5mM NaPi buffer, 95% H2O, 5% D2O | 95% H2O/5% D2O | 100mM NaCl, 5mM NaPi | 7.0 | 1 atm | 298 | |
4 | 2D NOESY | 100mM NaCl, 5mM NaPi buffer, 95% H2O, 5% D2O | 95% H2O/5% D2O | 100mM NaCl, 5mM NaPi | 7.0 | 1 atm | 275 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITYPLUS | 600 |
2 | Varian | UNITYPLUS | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 15 |
Representative Model | 15 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | CNS | 1.0 | Brunger |
2 | data analysis | Felix | 2000 | Molecular Simulations Inc. |
3 | processing | NMRPipe | 2.1 | Delaglio |
4 | refinement | CNS | 1.0 | Brunger |