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NMR Solution Structure of an Oxaliplatin 1,2-d(GG) Intrastrand Cross-Link in a DNA Dodecamer Duplex
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 100mM NaCl,5mM NaPi buffer, 95% H2O, 5% D2O 95% H2O/5% D2O 100mM NaCl, 5mM NaPi 7.0 1 atm 298 2 2D TOCSY 100mM NaCl,5mM NaPi buffer, 95% H2O, 5% D2O 95% H2O/5% D2O 100mM NaCl, 5mM NaPi 7.0 1 atm 298 3 DQF-COSY 100mM NaCl,5mM NaPi buffer, 95% H2O, 5% D2O 95% H2O/5% D2O 100mM NaCl, 5mM NaPi 7.0 1 atm 298 4 2D NOESY 100mM NaCl,5mM NaPi buffer, 95% H2O, 5% D2O 95% H2O/5% D2O 100mM NaCl, 5mM NaPi 7.0 1 atm 275
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian UNITYPLUS 600 2 Varian UNITYPLUS 800
NMR Refinement Method Details Software simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria closest to the average Conformers Calculated Total Number 20 Conformers Submitted Total Number 1 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CNS 1.0 Brunger 2 data analysis Felix 2000 molecualr Simulations Inc. 3 processing NMRPipe 2.1 Delaglio 4 refinement CNS 1.0 Brunger