☰ Navigation Tabs
Enzyme-ligand complex of P. aeruginosa PMM/PGM
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1P5G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 Na K tartrate, Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.23 44.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.896 α = 90 b = 74.307 β = 90 c = 85.476 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV Osmic MaxFlux 2002-07-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 100 97.1 0.045 29.2 4.8 31264 30357 34.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 96.4 0.255 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION rigid body refinement followed by regular refinement THROUGHOUT 1P5G 2 55.9 30325 28796 1526 97.19 0.1692 0.16531 0.16336 0.176 0.20349 0.2146 RANDOM 26.462
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.05 -1 2.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.948 r_scangle_it 2.677 r_scbond_it 1.56 r_angle_refined_deg 1.233 r_mcangle_it 0.992 r_angle_other_deg 0.819 r_mcbond_it 0.525 r_symmetry_vdw_other 0.266 r_nbd_other 0.236 r_nbd_refined 0.194
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.948 r_scangle_it 2.677 r_scbond_it 1.56 r_angle_refined_deg 1.233 r_mcangle_it 0.992 r_angle_other_deg 0.819 r_mcbond_it 0.525 r_symmetry_vdw_other 0.266 r_nbd_other 0.236 r_nbd_refined 0.194 r_symmetry_vdw_refined 0.16 r_symmetry_hbond_refined 0.15 r_xyhbond_nbd_refined 0.148 r_nbtor_other 0.082 r_chiral_restr 0.076 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3453 Nucleic Acid Atoms Solvent Atoms 310 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling CNS phasing