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Crystal structure of amino-terminal microtubule binding domain of EB1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 298 PEG4K, ammonium sulfate, MES, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2 38.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.856 α = 90 b = 48.453 β = 103.36 c = 44.968 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirror 2002-10-07 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X8C 0.9800 NSLS X8C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 20 0.042 23798
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.5 0.228 2278
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.45 20 22304 1211 98.82 0.17358 0.17272 0.1823 0.1886 0.2024 RANDOM 12.199
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 0.17 -0.03 0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.146 r_scangle_it 3.554 r_scbond_it 2.372 r_mcangle_it 1.446 r_angle_refined_deg 1.247 r_mcbond_it 0.788 r_angle_other_deg 0.78 r_symmetry_vdw_other 0.276 r_nbd_refined 0.229 r_nbd_other 0.218
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.146 r_scangle_it 3.554 r_scbond_it 2.372 r_mcangle_it 1.446 r_angle_refined_deg 1.247 r_mcbond_it 0.788 r_angle_other_deg 0.78 r_symmetry_vdw_other 0.276 r_nbd_refined 0.229 r_nbd_other 0.218 r_xyhbond_nbd_refined 0.156 r_nbtor_other 0.083 r_chiral_restr 0.081 r_symmetry_vdw_refined 0.071 r_symmetry_hbond_refined 0.054 r_bond_refined_d 0.02 r_gen_planes_other 0.013 r_gen_planes_refined 0.009 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1058 Nucleic Acid Atoms Solvent Atoms 136 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling DM phasing