1P7F
GB3 solution structure obtained by refinement of X-ray structure with dipolar couplings
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D IPAP [15N,1H]-HSQC | 25 mM NaH2PO4/Na2HPO4, 0.2 mg/mL NaN3, 1.5 mM GB3 protein and aligning media | 0.05 | 6.5 | ambient | 300 | ||
2 | 3D CT(H)CA(CO)NH | 25 mM NaH2PO4/Na2HPO4, 0.2 mg/mL NaN3, 1.5 mM GB3 protein and aligning media | 0.05 | 6.5 | ambient | 300 | ||
3 | 13C-coupled 3D HNCO | 25 mM NaH2PO4/Na2HPO4, 0.2 mg/mL NaN3, 1.5 mM GB3 protein and aligning media | 0.05 | 6.5 | ambient | 300 | ||
4 | quantitative J-correlation 3D TROSY-HNCO | 25 mM NaH2PO4/Na2HPO4, 0.2 mg/mL NaN3, 1.5 mM GB3 protein and aligning media | 0.05 | 6.5 | ambient | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 600 |
2 | Bruker | DRX | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | GB3 solution structure obtained by refinement of the X-ray structure of GB3 (1IGD) with C(alpha)-C', C'-N and N-H dipolar couplings measured in five aligning media (bicelle, PEG, pf1 phage, negatively and positively charged polyacrylamide gels). HA is placed at the position that yields best agreement with the C(alpha)-H(alpha) dipolar couplings. The HA positions of V42 and T55 are extreme and may reflect dynamic effects or errors in the backbone position of CA. Dipolar couplings originating on residues 10-11, 24-26, 39-41 and the N- and C-terminal residues were excluded, resulting in identity with the X-ray structure for these residues. | DYNAMO |
NMR Ensemble Information | |
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Conformer Selection Criteria | Best agreement with dipolar constraints |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 1 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | DYNAMO | 2.1 | Delaglio, F. |
2 | refinement | DYNAMO | 2.1 | Delaglio, F. |