☰ Navigation Tabs
Crystal Structure of the Human Y14/Magoh complex
Crystallization Crystal Properties Matthews coefficient Solvent content 2.35 47.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.15 α = 90 b = 108.455 β = 90.24 c = 50.942 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 4 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 1.7114, 1.7113, 1.6755 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 46.11 97 0.07 6.5 33810 33810
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 46.11 32107 1701 97.78 0.22232 0.21985 0.3895 0.26828 0.0665 RANDOM 21.407
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 -0.08 0.08 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.992 r_scangle_it 3.895 r_scbond_it 2.414 r_mcangle_it 1.759 r_angle_refined_deg 1.646 r_mcbond_it 0.945 r_angle_other_deg 0.931 r_symmetry_hbond_refined 0.36 r_symmetry_vdw_other 0.271 r_nbd_other 0.245
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.992 r_scangle_it 3.895 r_scbond_it 2.414 r_mcangle_it 1.759 r_angle_refined_deg 1.646 r_mcbond_it 0.945 r_angle_other_deg 0.931 r_symmetry_hbond_refined 0.36 r_symmetry_vdw_other 0.271 r_nbd_other 0.245 r_nbd_refined 0.221 r_xyhbond_nbd_refined 0.208 r_symmetry_vdw_refined 0.191 r_chiral_restr 0.118 r_nbtor_other 0.092 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_gen_planes_other 0.007 r_bond_other_d 0.003 r_dihedral_angle_2_deg r_xyhbond_nbd_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3866 Nucleic Acid Atoms Solvent Atoms 100 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling