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Horse liver alcohol dehydrogenase complexed with NADH and R-N-1-methylhexylformamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HLD PDB ENTRY 1HLD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 277 MPD, 50 mM ammonium tris-[(hydroxymethyl)methyl]-2-aminosulfonate buffer, 0.25 mM EDTA, pH 7.0, dialysis, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.14 41.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.095 α = 90 b = 180.34 β = 106.36 c = 87 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2001-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.00 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.57 20 94.29 0.047 0.047 32.9 3.3 191371 191371 1 24.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.57 1.63 79 0.2 5.2 2.8 16092
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HLD 1.57 20 1 191371 191371 1159 94.29 0.1527 0.15243 0.1546 0.19991 0.1981 RANDOM 19.166
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.96 0.08 -1.75 -0.17
RMS Deviations Key Refinement Restraint Deviation r_sphericity_bonded 6.339 r_dihedral_angle_1_deg 5.932 r_sphericity_free 5.824 r_scangle_it 5.009 r_scbond_it 3.344 r_mcangle_it 2.094 r_angle_refined_deg 1.469 r_mcbond_it 1.319 r_rigid_bond_restr 1.301 r_nbd_refined 0.198
RMS Deviations Key Refinement Restraint Deviation r_sphericity_bonded 6.339 r_dihedral_angle_1_deg 5.932 r_sphericity_free 5.824 r_scangle_it 5.009 r_scbond_it 3.344 r_mcangle_it 2.094 r_angle_refined_deg 1.469 r_mcbond_it 1.319 r_rigid_bond_restr 1.301 r_nbd_refined 0.198 r_symmetry_vdw_refined 0.18 r_symmetry_hbond_refined 0.141 r_xyhbond_nbd_refined 0.1 r_chiral_restr 0.096 r_bond_refined_d 0.014 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11140 Nucleic Acid Atoms Solvent Atoms 1249 Heterogen Atoms 224
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing