☰ Navigation Tabs
NMR structure of ubiquitin-like domain of hHR23B
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 CBCACONH, HNCACB, CCC-TOC-NNH, HCC-TOC-NNH, HNCO 2mM UbL domain 15N,13C; 50mM Sodium Phosphate Buffer with 100mM NaCl 92.5% H2O, 7.5% D2O 50mM sodium phosphate + 100mM sodium chloride 6.0 ambient 303 2 3D_15N-separated_TOCSY, Intensity-modulated 15N HSQC 2mM UbL domain 15N; 50mM Sodium Phosphate Buffer with 100mM NaCl 92.5% H2O, 7.5% D2O 50mM sodium phosphate + 100mM sodium chloride 6.0 ambient 303 3 2D NOESY 2mM UbL domain non-labeled; 50mM Sodium Phosphate Buffer with 100mM NaCl 100% D2O 50mM sodium phosphate + 100mM sodium chloride 6.0 ambient 303
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600
NMR Refinement Method Details Software Cyana-Automated NOE assignment, Torsion angle dynamics; Amber-Simulated annealing, Cyana output is the initial structure CYANA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 60 Conformers Submitted Total Number 14 Representative Model 1 (closest to the average)
Additional NMR Experimental Information Details Distance Restraints From 2D D2O-NOESY, 3D 15N-NOESY-HSQC, Angle Restaints From Intensity-modulated 15N HSQC and Talos Chemical shift analysis
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CYANA 1.0.6 2 refinement Amber 7