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Crystal structure of AQ_1354, a hypothetical protein from Aquifex aeolicus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 PEG 4K, Na Acetate, Tris-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.76 55.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.018 α = 90 b = 58.018 β = 90 c = 110.255 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2002-08-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 0.9792 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.89 41.17 100 0.055 25 6.5 14413 14413 29
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.894 1.943 100 0.459 2.2 5.8 982
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.894 12 13420 712 100 0.21522 0.20658 0.20524 0.2095 0.23423 0.2458 RANDOM 22.066
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 -0.17 0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 15.534 r_scangle_it 4.527 r_dihedral_angle_1_deg 3.598 r_scbond_it 2.655 r_angle_refined_deg 1.524 r_mcangle_it 1.504 r_mcbond_it 0.781 r_symmetry_hbond_refined 0.532 r_symmetry_vdw_refined 0.305 r_xyhbond_nbd_refined 0.221
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 15.534 r_scangle_it 4.527 r_dihedral_angle_1_deg 3.598 r_scbond_it 2.655 r_angle_refined_deg 1.524 r_mcangle_it 1.504 r_mcbond_it 0.781 r_symmetry_hbond_refined 0.532 r_symmetry_vdw_refined 0.305 r_xyhbond_nbd_refined 0.221 r_nbd_refined 0.213 r_chiral_restr 0.106 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1151 Nucleic Acid Atoms Solvent Atoms 50 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing