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Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.3 291 PEG 3350, PEG 400, Tris, NaCl, glycerol, pH 8.3, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.52 50.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.032 α = 90 b = 146.641 β = 90 c = 178.493 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 1.0 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 45 95.4 0.057 20.5 69924 69924 3 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.2 71 0.336 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 45.64 1 66288 66288 3570 100 0.21742 0.21435 0.2219 0.27467 0.2465 RANDOM 25.107
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 17.375 r_scangle_it 14.165 r_scbond_it 11.17 r_mcangle_it 6.887 r_mcbond_it 5.364 r_dihedral_angle_1_deg 3.25 r_angle_refined_deg 1.122 r_symmetry_hbond_refined 1.106 r_symmetry_vdw_refined 0.392 r_nbd_refined 0.267
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 17.375 r_scangle_it 14.165 r_scbond_it 11.17 r_mcangle_it 6.887 r_mcbond_it 5.364 r_dihedral_angle_1_deg 3.25 r_angle_refined_deg 1.122 r_symmetry_hbond_refined 1.106 r_symmetry_vdw_refined 0.392 r_nbd_refined 0.267 r_xyhbond_nbd_refined 0.185 r_chiral_restr 0.075 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_symmetry_vdw_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8025 Nucleic Acid Atoms Solvent Atoms 641 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing