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Structure and Function Analysis of Peptide Antagonists of Melanoma Inhibitor of Apoptosis (ML-IAP)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 298 sodium acetate, PEG 300, DTT , pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.99 58.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.77 α = 90 b = 82.77 β = 90 c = 93.17 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 double crystal monochromator 2002-04-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 1.2822, 1.2834, 1.1921 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 30 98.6 0.04 0.04 19.1 2 74935 73906 33.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28 99.6 0.216 0.216 4.4 2 7395
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.2 20 37860 33874 1766 95.16 0.172 0.17202 0.16929 0.1698 0.22502 0.2208 RANDOM 36.119
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 0.15 0.31 -0.46
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.761 r_mcangle_it 5.086 r_dihedral_angle_1_deg 4.858 r_scbond_it 3.817 r_mcbond_it 3.041 r_angle_refined_deg 1.024 r_nbd_refined 0.211 r_symmetry_vdw_refined 0.162 r_symmetry_hbond_refined 0.151 r_xyhbond_nbd_refined 0.138
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.761 r_mcangle_it 5.086 r_dihedral_angle_1_deg 4.858 r_scbond_it 3.817 r_mcbond_it 3.041 r_angle_refined_deg 1.024 r_nbd_refined 0.211 r_symmetry_vdw_refined 0.162 r_symmetry_hbond_refined 0.151 r_xyhbond_nbd_refined 0.138 r_chiral_restr 0.072 r_bond_refined_d 0.008 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3978 Nucleic Acid Atoms Solvent Atoms 401 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling CNS phasing