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Crystal structure of Calystegia sepium agglutinin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 20-30% PEG 4K, 0.2 imidazole/malate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.69 26.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.562 α = 104.99 b = 51.792 β = 94.36 c = 79.78 γ = 94.85
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2000-10-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 0.931 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.37 25 94 0.022 19.1 1.8 92547 14.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.37 25 90689 1843 93.97 0.1531 0.15256 0.1797 0.2227 RANDOM 10.992
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.71 0.49 -0.12 -0.95 0.03 -0.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.844 r_scangle_it 3.117 r_scbond_it 2.071 r_mcangle_it 1.549 r_angle_refined_deg 1.398 r_mcbond_it 0.863 r_angle_other_deg 0.801 r_symmetry_vdw_other 0.324 r_symmetry_vdw_refined 0.271 r_nbd_other 0.264
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.844 r_scangle_it 3.117 r_scbond_it 2.071 r_mcangle_it 1.549 r_angle_refined_deg 1.398 r_mcbond_it 0.863 r_angle_other_deg 0.801 r_symmetry_vdw_other 0.324 r_symmetry_vdw_refined 0.271 r_nbd_other 0.264 r_symmetry_hbond_refined 0.186 r_nbd_refined 0.178 r_xyhbond_nbd_refined 0.168 r_nbtor_other 0.089 r_chiral_restr 0.083 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_xyhbond_nbd_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4437 Nucleic Acid Atoms Solvent Atoms 589 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement DENZO data reduction CCP4 data scaling AMoRE phasing