1ORL

1H NMR structure determination of Viscotoxin C1


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D TOCSY0.7 mM viscotoxin B; phosphate buffer pH 3.6 50mM; 90%H20, 10% D2O90%H20, 10% D2O50mM phosphate buffer3.6ambient285
22D NOESY0.7 mM viscotoxin B; phosphate buffer pH 3.6 50mM; 90%H20, 10% D2O90%H20, 10% D2O50mM phosphate buffer3.6ambient285
3DQF-COSY0.7 mM viscotoxin B; phosphate buffer pH 3.6 50mM; 90%H20, 10% D2O90%H20, 10% D2O50mM phosphate buffer3.6ambient285
42D TOCSY0.7 mM viscotoxin B; phosphate buffer pH 3.6 50mM; 90%H20, 10% D2O90%H20, 10% D2O50mM phosphate buffer3.6ambient295
52D NOESY0.7 mM viscotoxin B; phosphate buffer pH 3.6 50mM; 90%H20, 10% D2O90%H20, 10% D2O50mM phosphate buffer3.6ambient295
6DQF-COSY0.7 mM viscotoxin B; phosphate buffer pH 3.6 50mM; 90%H20, 10% D2O90%H20, 10% D2O50mM phosphate buffer3.6ambient295
72D TOCSY0.7 mM viscotoxin B; phosphate buffer pH 3.6 50mM; D2OD2O50mM phosphate buffer3.6ambient285
82D NOESY0.7 mM viscotoxin B; phosphate buffer pH 3.6 50mM; D2OD2O50mM phosphate buffer3.6ambient285
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX500
2BrukerDMX500
NMR Refinement
MethodDetailsSoftware
DYANA was employed for structure determination Discover was employed for energy minimisation of DYANA structuresthe structures are based on a total of 691 restraints. 631 are NOE-derived distance restraints,(224intraresidues,159 short range, 125 medium range and 123 long range), 18 dihedral angle restraints, 24 for backbone H-bonds and 18 for disulphide bridges. Bond lengths CD-OE2 in glutamic acid residues and CG-OD2 in aspartic acid residues are larger than typical values (as seen in remark 500) because protonated forms were considered due to the low experimental pH.DYANA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number600
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsThis structure was determined using standard 1H 2D NMR techniques
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionDYANA1.4Guentert
2structure solutionDISCOVER1997 versionMolecular Simulations, san Diego, CA, USA
3processingXWINNMR2.6Bruker
4data analysisXEASY1.3Xia and Bartels
5refinementDISCOVER1997 versionMolecular Simulations, san Diego, CA, USA