1ORL
1H NMR structure determination of Viscotoxin C1
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D TOCSY | 0.7 mM viscotoxin B; phosphate buffer pH 3.6 50mM; 90%H20, 10% D2O | 90%H20, 10% D2O | 50mM phosphate buffer | 3.6 | ambient | 285 | |
2 | 2D NOESY | 0.7 mM viscotoxin B; phosphate buffer pH 3.6 50mM; 90%H20, 10% D2O | 90%H20, 10% D2O | 50mM phosphate buffer | 3.6 | ambient | 285 | |
3 | DQF-COSY | 0.7 mM viscotoxin B; phosphate buffer pH 3.6 50mM; 90%H20, 10% D2O | 90%H20, 10% D2O | 50mM phosphate buffer | 3.6 | ambient | 285 | |
4 | 2D TOCSY | 0.7 mM viscotoxin B; phosphate buffer pH 3.6 50mM; 90%H20, 10% D2O | 90%H20, 10% D2O | 50mM phosphate buffer | 3.6 | ambient | 295 | |
5 | 2D NOESY | 0.7 mM viscotoxin B; phosphate buffer pH 3.6 50mM; 90%H20, 10% D2O | 90%H20, 10% D2O | 50mM phosphate buffer | 3.6 | ambient | 295 | |
6 | DQF-COSY | 0.7 mM viscotoxin B; phosphate buffer pH 3.6 50mM; 90%H20, 10% D2O | 90%H20, 10% D2O | 50mM phosphate buffer | 3.6 | ambient | 295 | |
7 | 2D TOCSY | 0.7 mM viscotoxin B; phosphate buffer pH 3.6 50mM; D2O | D2O | 50mM phosphate buffer | 3.6 | ambient | 285 | |
8 | 2D NOESY | 0.7 mM viscotoxin B; phosphate buffer pH 3.6 50mM; D2O | D2O | 50mM phosphate buffer | 3.6 | ambient | 285 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
2 | Bruker | DMX | 500 |
NMR Refinement | ||
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Method | Details | Software |
DYANA was employed for structure determination Discover was employed for energy minimisation of DYANA structures | the structures are based on a total of 691 restraints. 631 are NOE-derived distance restraints,(224intraresidues,159 short range, 125 medium range and 123 long range), 18 dihedral angle restraints, 24 for backbone H-bonds and 18 for disulphide bridges. Bond lengths CD-OE2 in glutamic acid residues and CG-OD2 in aspartic acid residues are larger than typical values (as seen in remark 500) because protonated forms were considered due to the low experimental pH. | DYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 600 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | This structure was determined using standard 1H 2D NMR techniques |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | DYANA | 1.4 | Guentert |
2 | structure solution | DISCOVER | 1997 version | Molecular Simulations, san Diego, CA, USA |
3 | processing | XWINNMR | 2.6 | Bruker |
4 | data analysis | XEASY | 1.3 | Xia and Bartels |
5 | refinement | DISCOVER | 1997 version | Molecular Simulations, san Diego, CA, USA |