☰ Navigation Tabs
Crystal structure of the measles virus phosphoprotein XD domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 0.1 M CHES PH 8.5, 1.25 M NA CITRATE
Crystal Properties Matthews coefficient Solvent content 2.36 47.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.109 α = 90 b = 50.109 β = 90 c = 47.127 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2003-06-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 12 99.6 0.052 6.5 6.8 6611
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 100 0.472 1.6 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.8 12 6291 310 99.8 0.2 0.198 0.1931 0.239 0.2294 RANDOM 35.76
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.34 0.67 1.34 -2.01
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 7.899 r_scbond_it 5.632 r_chiral_restr 4.483 r_mcangle_it 3.207 r_mcbond_it 1.857 r_angle_other_deg 1.502 r_nbd_refined 0.226 r_symmetry_hbond_refined 0.2 r_xyhbond_nbd_refined 0.181 r_symmetry_vdw_refined 0.153
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 7.899 r_scbond_it 5.632 r_chiral_restr 4.483 r_mcangle_it 3.207 r_mcbond_it 1.857 r_angle_other_deg 1.502 r_nbd_refined 0.226 r_symmetry_hbond_refined 0.2 r_xyhbond_nbd_refined 0.181 r_symmetry_vdw_refined 0.153 r_bond_refined_d 0.024 r_gen_planes_refined 0.01 r_bond_other_d r_angle_refined_deg r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 440 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling