☰ Navigation Tabs
Archaeal fructose 1,6-bisphosphate aldolase covalently bound to the substrate dihydroxyacetone phosphate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OJX PDB ENTRY 1OJX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 9% (W/V) PEG 4000, 0.1 M NA ACETATE PH 5.0, 1-8% GLYCEROL, 100 MM DHAP
Crystal Properties Matthews coefficient Solvent content 2.3 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.4 α = 90 b = 157.3 β = 108.2 c = 101.5 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2002-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 40 90.2 0.071 13.6 3.6 125363
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.19 59.3 0.272 2.3 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OJX 2.1 36.51 125363 3203 100 0.164 0.163 0.2076 0.185 0.2275 RANDOM 10.04
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 0.07 -0.12 0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.666 r_scangle_it 3.916 r_scbond_it 2.199 r_mcangle_it 1.295 r_angle_refined_deg 1.275 r_angle_other_deg 0.834 r_mcbond_it 0.603 r_symmetry_vdw_other 0.37 r_symmetry_vdw_refined 0.327 r_symmetry_hbond_refined 0.255
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.666 r_scangle_it 3.916 r_scbond_it 2.199 r_mcangle_it 1.295 r_angle_refined_deg 1.275 r_angle_other_deg 0.834 r_mcbond_it 0.603 r_symmetry_vdw_other 0.37 r_symmetry_vdw_refined 0.327 r_symmetry_hbond_refined 0.255 r_nbd_other 0.239 r_nbd_refined 0.202 r_xyhbond_nbd_refined 0.15 r_nbtor_other 0.086 r_chiral_restr 0.079 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.003 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19358 Nucleic Acid Atoms Solvent Atoms 641 Heterogen Atoms 90
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling