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4-AMINOBUTYRATE-AMINOTRANSFERASE FROM PIG
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GTX PDB ENTRY 1GTX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.7 pH 5.70
Crystal Properties Matthews coefficient Solvent content 2.41 49.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.597 α = 90 b = 225.045 β = 108.39 c = 70.349 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF ESRF
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 28.2 90.8 0.085 5.1 2.2 39236
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 93 0.2 3.25 2.04
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GTX 2.3 30 76236 4018 89.8 0.188 0.1957 0.221 RANDOM 18.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.77 -0.71 1.1 1.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.888 r_dihedral_angle_1_deg 3.704 r_scangle_it 2.31 r_scbond_it 1.312 r_angle_refined_deg 1.296 r_mcangle_it 0.82 r_angle_other_deg 0.743 r_symmetry_hbond_refined 0.455 r_mcbond_it 0.405 r_symmetry_vdw_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.888 r_dihedral_angle_1_deg 3.704 r_scangle_it 2.31 r_scbond_it 1.312 r_angle_refined_deg 1.296 r_mcangle_it 0.82 r_angle_other_deg 0.743 r_symmetry_hbond_refined 0.455 r_mcbond_it 0.405 r_symmetry_vdw_refined 0.313 r_symmetry_vdw_other 0.3 r_symmetry_hbond_other 0.275 r_nbd_refined 0.231 r_nbd_other 0.204 r_xyhbond_nbd_refined 0.159 r_xyhbond_nbd_other 0.143 r_chiral_restr 0.079 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_gen_planes_other 0.004 r_bond_other_d 0.001 r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_nbtor_other r_metal_ion_refined r_metal_ion_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14363 Nucleic Acid Atoms Solvent Atoms 633 Heterogen Atoms 84
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling CCP4 phasing